DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Available on many operating systems
All Algorithms available via CLI
Create your Own
K-Fold cross validation
Single Shell: DTI, CSA, SFM, SDT, Q-Ball, CSD, ...
Multi-Shell: GQI, DTI, DKI, SHORE, MAPMRI, MSMT-CSD, ...
Diffeomorphic 2D/3D Registration
Streamlines based Registration
High resolution DWI
LPCA - MPPCA
Non Local Means
interactive tractogram visualization
Advanced UI and Shaders
DIPY 1.5.0 released March 11, 2022.
DIPY 1.4.1 released May 6, 2021.
DIPY 1.4.0 released March 13, 2021.
See some of our Past Announcements
DIPY 1.5.0 is now available. New features include:
New reconstruction model added: Q-space Trajectory Imaging (QTI).
New reconstruction model added: Robust and Unbiased Model-BAsed Spherical Deconvolution (RUMBA-SD).
New reconstruction model added: Residual block Deep Neural Network (ResDNN).
Masking management in Affine Registration added.
Multiple Workflows updated (DTIFlow, DKIFlow, ImageRegistrationFlow) and added (MotionCorrectionFlow).
Compatibility with Python 3.10 added.
Migrations from Azure Pipeline to Github Actions.
Large codebase cleaning.
New parallelisation module added.
dipy.io.bvectxt module deprecated.
New DIPY Horizon features (ROI Visualizer, random colors flag).
Large documentation update.
Closed 129 issues and merged 72 pull requests.
See Older Highlights.
Thu Sep 29
Book your spot! https://t.co/mf2qIIkutD
Thu Sep 29
🥳 DIPY Office Hours is restarting next week! 🤗 Do you have an issue with your code or just a simple question for pi… https://t.co/qrnJqsoChr
Fri Sep 23
RT @skoudoro: #CZIOpenSci arrived at its end. Thanks to the organizers, speakers, and this amazing community!! it was a great experience! H…
Thu Sep 15
RT @dipymri: We are pleased to announce that we have released ALL DIPY Workshop 2022 videos in our YT channel 🌟https://t.co/eWBUTjWoXr🌟This…
Tue Sep 13
We are pleased to announce that we have released ALL DIPY Workshop 2022 videos in our YT channel 🌟… https://t.co/zsh53KaRCT
Garyfallidis E, Brett M, Amirbekian B, Rokem A, van der Walt S, Descoteaux M, Nimmo-Smith I and Dipy Contributors (2014). DIPY, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, vol.8, no.8.