- dipy_apply_transform [-h] [–transform_type str] [–out_dir str]
[–out_file str] static_image_files moving_image_files transform_map_file
static_image_files Path of the static image file. moving_image_files Path of the moving image(s). It can be a single image or a folder containing multiple images. transform_map_file For the affine case, it should be a text(*.txt) file containing the affine matrix. For the diffeomorphic case, it should be a nifti file containing the mapping displacement field in each voxel with this shape (x, y, z, 3, 2)
- -h, --help
show this help message and exit
- --transform_type str
Select the transformation type to apply between ‘affine’ or ‘diffeomorphic’. (default affine)
- --out_dir str
Directory to save the transformed files (default ‘’).
- --out_file str
Name of the transformed file (default ‘transformed.nii.gz’). It is recommended to use the flag –mix-names to prevent the output files from being overwritten.