dipy_buan_profiles

Usage

dipy_buan_profiles [-h] [–no_disks int] [–out_dir str]

model_bundle_folder subject_folder

Workflow of bundle analytics.

Applies statistical analysis on bundles of subjects and saves the results in a directory specified by out_dir.

Positional Arguments

model_bundle_folder Path to the input model bundle files. This path may contain wildcards to process multiple inputs at once. subject_folder Path to the input subject folder. This path may contain wildcards to process multiple inputs at once.

Optional Arguments

-h, --help

show this help message and exit

--no_disks int

Number of disks used for dividing bundle into disks. (Default 100)

Output Arguments(Optional)

--out_dir str

Output directory (default input file directory)

References

Chandio19

Chandio, B.Q., S. Koudoro, D. Reagan, J. Harezlak,E. Garyfallidis, Bundle Analytics: a computational and statisticalanalyses framework for tractometric studies, Proceedings of:International Society of Magnetic Resonance in Medicine (ISMRM),Montreal, Canada, 2019.

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.