dipy_labelsbundles

Usage

dipy_labelsbundles [-h] [–out_dir str] [–out_bundle str]

streamline_files labels_files

Extract bundles using existing indices (labels)

Positional Arguments

streamline_files The path of streamline files where you want to recognize bundles labels_files The path of model bundle files

Optional Arguments

-h, --help

show this help message and exit

Output Arguments(Optional)

--out_dir str

Output directory (default input file directory)

--out_bundle str

Recognized bundle in the space of the model bundle (default ‘recognized_orig.trk’)

References

Garyfallidis17

Garyfallidis et al. Recognition of white matter bundles using local and global streamline-based registration and clustering, Neuroimage, 2017.

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.