dipy_mask

Usage

dipy_mask [-h] [–ub float] [–out_dir str] [–out_mask str]

input_files lb

Workflow for creating a binary mask

Positional Arguments

input_files Path to image to be masked. lb Lower bound value.

Optional Arguments

-h, --help

show this help message and exit

--ub float

Upper bound value (default Inf)

Output Arguments(Optional)

--out_dir str

Output directory (default input file directory)

--out_mask str

Name of the masked file (default ‘mask.nii.gz’)

References

Garyfallidis, E., M. Brett, B. Amirbekian, A. Rokem, S. Van Der Walt, M. Descoteaux, and I. Nimmo-Smith. Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics, 1-18, 2014.