Below, an overview of all reconstruction models available on DIPY.
Note: Some reconstruction models do not have a tutorial yet
Method |
Single Shell |
Multi Shell |
Cartesian |
Ideal Data Requirements |
References |
DTI (SLS, WLS, NNLS) |
Yes |
Yes |
Yes |
- All shells should be < 1000 |
Basser 1994 |
FwDTI |
No |
Yes |
No |
|
Pasternak 2009,
Henriques et al., 2017
|
DKI - Standard |
No |
Yes |
No |
|
Jensen 2005 |
DKI - Micro (WMTI) |
No |
Yes |
No |
|
Fieremans 2011 |
Mean Signal DKI |
No |
Yes |
No |
|
Henriques, 2018 |
CSA |
Yes |
No |
No |
|
Aganj 2010 |
Westin's CSA |
Yes |
No |
No |
|
|
IVIM |
No |
Yes |
No |
- low b-values are needed |
LeBihan 1984 |
IVIM Variable Projection |
No |
Yes |
No |
|
Fadnavis 2019 |
SDT |
Yes |
No |
No |
|
Descoteaux 2009 |
DSI |
No |
No |
Yes |
|
Wedeen 2008 |
DSID |
No |
No |
Yes |
|
Canales-Rodriguez 2010 |
GQI - GQI2 |
No |
Yes |
Yes |
|
Yeh 2010 |
SFM |
Yes |
Yes |
No |
|
Rokem 2015 |
Q-Ball (OPDT) |
Yes |
No |
No |
|
Tuch 2004,
Descoteaux 2007,
Tristan-Vega 2010
|
SHORE |
No |
Yes |
No |
|
Merlet 2013,
Özarslan 2009,
Özarslan 2008 |
MAP-MRI |
No |
Yes |
No |
|
Ozarslan 2013 |
MAPL |
No |
Yes |
No |
|
Fick 2016 |
CSD |
Yes |
No |
No |
|
Tournier 2017
Descoteaux 2008
Tournier 2007 |
SMS/MT CSD |
No |
Yes |
No |
|
Jeurissen 2014 |
ForeCast |
No |
Yes |
No |
|
Anderson 2005 |
Ball & Stick |
Yes |
Yes |
No |
|
Behrens 2013 |
QTau-MRI |
No |
Yes |
No |
|
Fick 2017 |
Power Map |
Yes |
Yes |
No |
|
DellAcqua2014 |
SMT / SMT2 |
No |
Yes |
No |
|
NetoHe2019, Kaden2016b |
Constrained Spherical Deconvolution
Fiber Orientation Estimated using Continuous Axially Symmetric Tensors
Simple Harmonic Oscillator based Reconstruction and Estimation
Mean Apparent Propagator (MAP)-MRI
Studying diffusion time-dependence using qt-dMRI
Free-water Diffusion Tensor Imaging
Diffusion Kurtosis Imaging
White Matter Tract Integrity Model
Q-Ball Constant Solid Angle
Diffusion Spectrum Imaging
Generalized Q-Sampling Imaging
Intravoxel incoherent motion (IVIM)
Intra-Voxel Signal Reconstruction