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Documentation 1.6.0. > DIPY Workflows Interfaces
  • DIPY Workflows Interfaces

DIPY Workflows Interfaces

  • Introduction to command line interfaces
    • References
  • Downloading DIPY datasets
  • Denoising
    • Denoising using Overcomplete Local PCA
    • Denoising using Marcenko-Pastur PCA
    • Denoising using NLMEANS
    • Overview of Denoising Methods
      • Diffusion
      • Structural
      • References
  • Between-Volumes Motion Correction
    • Motion Correction
      • References
  • Gibbs Unringing
    • Suppress Gibbs Oscillations
      • References
  • Registration
    • Image Registration
    • Symmetric Diffeomorphic Registration
    • Apply a Transformation
    • Streamline-based Registration
      • References
  • Reconstruction
    • Constrained Spherical Deconvolution (CSD)
    • Mean Apparent Propagator (MAP)-MRI
    • Diffusion Tensor Imaging (DTI)
    • Diffusion Kurtosis Imaging (DKI)
    • Constant Solid Angle (CSA)
    • Intravoxel Incoherent Motion (IVIM)
      • References
  • Tracking
    • Local Fiber Tracking
      • EuDX Tracking
      • Deterministic Tracking
      • Probabilistic Tracking
      • Closest Peaks Tracking
    • Particle Filtering Tracking (PFT)
    • Overview of Fiber Tracking Methods
    • References
  • BUndle ANalytics (BUAN) framework
    • Group Comparison of Bundle Profiles
    • Shape similarity of specific bundles across the populations
    • Reproducing results on larger dataset:
  • White Matter Bundle Segmentation with RecoBundles
    • Streamline-Based Linear Registration
    • RecoBundles
    • References

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Support
  • The department of Intelligent Systems Engineering of Indiana University
  • The National Institute of Biomedical Imaging and Bioengineering, NIH
  • The Gordon and Betty Moore Foundation and the Alfred P. Sloan Foundation, through the University of Washington eScience Institute Data Science Environment
  • Google supported DIPY through the Google Summer of Code Program during Summer 2015, 2016, 2018

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