Chair, DIPY Founder & Lead Developer
Indiana University
Associate DIPY Lead
eScience Institute, University of Washington, Seattle
DIPY Scientific Advisor
University of Sherbrooke, QC, CA
CIBM & CHUV & EPFL
Lausanne, CH
Harvard Medical School
Vanderbilt University
University of Copenhagen
Vanderbilt University
DIPY Advisor on Statistics
Indiana University
University of Eastern Finland
University of Pennsylvania
Swiss Federal Institute of Technology Lausanne (EPFL)
University College London
Champalimaud Research
Champalimaud Centre for the Unknown, PT
McGill University
Indiana University
Psychological and Brain Sciences
Indiana University
Imaging Genetics Center, Institute for Neuro Imaging and Informatics, USC
Mondragon Unibertsitatea
Vanderbilt University
McGill University
DIPY Release Manager
Indiana University
Indiana University
Indiana University
Indiana University
Indiana University
10:00 AM - Workshop Overview & Installation Instructions
Eleftherios Garyfallidis
10:20 AM - Visualize your data with DIPY Horizon
Javier Guaje
10:45 AM - Q&A - Installation and Visualization
Javier Guaje
Eleftherios Garyfallidis
11:00 AM - Introduction to Computational Neuroanatomy
Wei Tang
11:45 AM - Q&A - Computational neuroanatomy
Wei Tang
12:00 PM - Diffusion Tensor Imaging and Diffusion Kurtosis Imaging
Rafael Neto Henriques
Ariel Rokem
12:45 PM - Q&A - DTI and DKI
Rafael Neto Henriques
Ariel Rokem
13:00 PM - Denoising
Shreyas Fadnavis
13:45 PM - Q&A - Denoising
Shreyas Fadnavis
14:00 PM - Keynote Live - Data driven interference in diffusion MRI: Deep learning harmonization of quantitative biomarkers
Bennett Landman
14:45 PM - Keynote Q&A - Data Driven Interference in dMRI
Bennett Landman
15:00 PM - Ask me Anything on DTI, DKI, Denoising, Preprocessing
Eleftherios Garyfallidis
Shreyas Fadnavis
Rafael Neto Henriques
Bennett Landman
Javier Guaje
Wei Tang
Ariel Rokem
16:00 PM - Live Session / Demo / Coding / Help
10:00 AM - A tour of spherical harmonics-based local reconstruction techniques in DIPY
Maxime Descoteaux
Eleftherios Garyfallidis
10:45 AM - Q&A - Reconstruction Model
Eleftherios Garyfallidis
Maxime Descoteaux
11:00 AM - Keynote Live - RUMBA-SD
Kenji Marshall
Erick Jorge Canales-Rodríguez
11:45 AM - Keynote Q&A - RUMBA-SD
Kenji Marshall
Erick Jorge Canales-Rodríguez
12:00 PM - Microstructure Modeling
Rafael Neto Henriques
12:45 PM - Q&A - Microstructure Modeling
Rafael Neto Henriques
13:00 PM - Focus on Q-Space Trajectory Imaging (QTI)
Leevi Kerkelä
Rafael Neto Henriques
13:45 PM - Q&A - QTI
Leevi Kerkelä
14:00 PM - Keynote Live - Optimization constraints for dMRI (QTI+, CSD+, DKI+)
Tom Dela Haije
14:45 PM - Keynote Q&A - MAP+, QTI+, CSD+, DKI+, ...
Tom Dela Haije
15:00 PM - Ask me anything on Reconstruction and Microstructure Model
Tom Dela Haije
Erick Jorge Canales-Rodríguez
Leevi Kerkelä
Rafael Neto Henriques
Maxime Descoteaux
Kenji Marshall
Eleftherios Garyfallidis
16:00 PM - Live Session / Demo / Coding / Help
10:00 AM - Diffusion Tractography and Connectivity
Gabriel Girard
Etienne St-Onge
10:45 AM - Q&A - Tractography and Connectivity
Etienne St-Onge
Gabriel Girard
11:00 AM - Keynote Live - Parallel Transport Tractography
Baran Aydogan
11:45 AM - Keynote Q&A - Parallel Transport Tractography
Baran Aydogan
12:00 PM - Understanding Tractography File Formats and Reference Spaces
François Rheault
12:45 PM - Q&A - File Format
François Rheault
13:00 PM - Automatic Segmentation and Registration of Bundles
Eleftherios Garyfallidis
13:45 PM - Q&A - Bundle Registration
Eleftherios Garyfallidis
14:00 PM - Keynote Live - Deep learning for white matter parcellation
Lauren J. O'Donnell
14:45 PM - Keynote Q&A - Deep learning for white matter parcellation
Lauren J. O'Donnell
15:00 PM - Ask me Anything - Tractography, Parcellation
Gabriel Girard
Etienne St-Onge
Eleftherios Garyfallidis
Baran Aydogan
Lauren J. O'Donnell
François Rheault
16:00 PM - Live Session / Demo / Coding / Help
10:00 AM - Tractometry
Bramsh Qamar Chandio
10:45 AM - Q&A - Tractometry
Bramsh Qamar Chandio
11:00 AM - Statistical analysis and group analysis
Jaroslaw Harezlak
11:45 AM - Q&A - Statistical Analysis
Jaroslaw Harezlak
12:00 PM - Population-specific Bundle Atlasing
David Romero-Bascones
12:45 PM - Q&A - Bundle Atlasing
David Romero-Bascones
13:00 PM - BundleWarp, nonrigid registration of white matter tracts
Bramsh Qamar Chandio
13:45 PM - Q&A - Bundle Warp
Bramsh Qamar Chandio
14:00 PM - Keynote Live - Challenges in diffusion MRI tractography
Kurt G Schilling
14:45 PM - Keynote Q&A - Challenge in dMRI
Kurt G Schilling
15:00 PM - Ask me Anything on Bundles, Tractometry, Stats, Tissue
Eleftherios Garyfallidis
Jaroslaw Harezlak
Hu Cheng
Julio Villalon
Kurt G Schilling
Bramsh Qamar Chandio
16:00 PM - Live Session / Demo / Coding / Help
10:00 AM - Motion Correction & Image Registration
Serge Koudoro
10:45 AM - Q&A - Registration
Serge Koudoro
11:00 AM - Removing SoS noise with CNNs
Hu Cheng
11:20 AM - Brain Extraction using V-Net and CRF layers
Jong Sung Park
11:45 AM - Q&A - Noise and brain Extraction
Hu Cheng
Jong Sung Park
12:00 PM - IVIM and Optimization
Shreyas Fadnavis
12:45 PM - Q&A - IVIM
Shreyas Fadnavis
13:00 PM - Tissue classification
Hu Cheng
Julio Villalon
13:45 PM - Q&A - Tissue Classification
Julio Villalon
Hu Cheng
14:00 PM - Keynote Live - QSIPrep – Preprocessing pipeline for Diffusion MRI
Matt Cieslak
14:45 PM - Keynote Q&A - QSIprep
Matt Cieslak
15:00 PM - Ask me Anything
Serge Koudoro
Julio Villalon
Jong Sung Park
Matt Cieslak
Hu Cheng
Shreyas Fadnavis
16:00 PM - Live Session / Demo / Coding / Help
Registration deadline: 25th March 2022
DIPY Workshop is free
Contact us for more information by sending an email at dipy -at- python.org
or joining our interactive chatroom at https://gitter.im/dipy/dipy