Community Bonding and Week 1 Insights#
Hey there! I’m Shilpi, a Computer Science and Engineering undergrad at Dayananda Sagar College of Engineering, Bangalore. I’m on track to grab my degree in 2024. My relationship with Python started just before I started college - got my hands dirty with this awesome Python Specialization course on Coursera. When it comes to what makes me tick, it’s all things tech. I mean, new technology always excites me. Ubuntu, with its fancy terminal and all, used to intimidate me at first, but now, I get a thrill out of using it to do even the simplest things. Up until 2nd year I used to do competitive programming and a bit of ML. But from 3rd year I’ve been into ML very seriously, doing several courses on ML as well solving ML problems on kaggle. ML is very fun and I’ve done a few project on ML as well. Coding? Absolutely love it. It’s like, this is what I was meant to do, y’know? I got introduced to git and GitHub in my first year - was super curious about how the whole version control thing worked. And then, I stumbled upon the world of open source in my second year and made my first contribution to Tardis: (tardis-sn/tardis#1825) Initially, I intended on doing GSoC during my second year but ended up stepping back for reasons. This time, though, I was fired up to send in a proposal to at least one organization in GSoC. And, well, here we are!
Intro to Open-Source and GSoC#
So, I started off finding out about GSoC - how many hours do selected folks put in, the kind of projects people usually tackle, and all that stuff. To get a handle on what they want in a proposal, I turned to some successful ones from previous years. Really gave me an idea of the kind of stuff they expect you to bring to the table. Trying to find the organization that’d go with my skill set, I stumbled upon Python Software Foundation, and I was like, “This is it!”. And under PSF, there was DIPY. Diving into DIPY’s docs was a breeze as they’ve got it so well put together that I managed to get my head around a completely new topic, “Diffusion MRI”, just by going through their introductory docs and a bit of gpt. While exploring DIPY, I noticed this issue that needed a new feature. It took a good bit of reading to really understand what they were looking for and how to actually build that feature. And then, I submitted my first PR (check it out here)! Getting it merged wasn’t exactly easy - there was a lot of room for improvement up in my code, but honestly, I feel like it’s all part of the learning curve. I was a bit of a latecomer to GSoC, so I didn’t have much time to make up a ton of PRs. Plus, by the time I’d submitted my first PR, the proposal submission period had already begun. So, I focused all my energy on increasing my knowledge on the topic and polishing my proposal. Plus, I’d wanted to get my proposal reviewed at least once before I submitted it.
May 4th: I woke up feeling like a nervous wreck. That interview with my organization? Let’s just say it didn’t go very well. Yet, I couldn’t help but hope for the best. The results were supposed to drop at 11:45pm, a moment I wasn’t exactly looking forward to. I tried logging into Google to check, but couldn’t. Too many people doing the same thing. I threw my hands up, gave up on the login battle, and got back to work, hoping to distract myself. Fast forward to 1:30am - I figured by now, the log-in rush should have calmed down. I gave it another shot and… I got in! I clicked over to the dashboard, and there it was. My project. Right there, listed under the Projects section. I had heard that if you get selected, your proposal shows up there. To confirm that it was actually happening, I picked my phone to check if I’d gotten any official email yet. And yes!! I’d gotten it at 12:49 am. I just hadn’t checked. I whooped, woke up my roomies, rushed to call my parents. Honestly, words can’t even begin to capture how I felt at that moment. Pure, undiluted joy, that’s what it was. My parents, surprisingly actually picked up my call. But the minute I told them I’d made the cut, they congratulated me. It was heck of a day, (^^).
What I did this week#
As this was my first week I majorly spent a lot of time knowing about the codebase of the organization. I also went through a couple of research papers of projects which have already been implemented to get information related to my branch.
I’m currently in the middle of reading through the research paper, which is directly related to my project: here
I also went through some of the videos related to information on cti, a couple of them are: this and also, this
I also submitted this PR. In this PR members of my organization are supposed to submit all the
But mostly I spent a lot of time in implementing the already existing MultiTensor Simulation on my local system , and also completing the assignment which my mentor gave me.
In this assignment, I was given a specific number of directions, ‘n’ and some steps on how to produce bvals and bvecs. I had to create
gtab2. and then taking
gtab2 as input, I was supposed to create a function which would give output btensor i.e btens.
The purpose of this assignment was to strengthen my knowledge on concepts I’ve already read and also to give me some coding experience, as this is critical in order for me to be able to implement the rest of my project.
What is coming up next Week#
These simulations were basically the first task of the proposal. So after the btensor I intend on producing the synthetic signals using the qti model (hint on how it is done in qti tests). make a figure similar to figure 1 of the 2021 CTI paper: here
Did I get stuck anywhere#
I got stuck while creating this PR. I had to rebase a bunch of commits, and this was a new concept to me, so it took me a while to figure it out. Due to rebasing, I ended up creating a bunch of other commits, which made the commit history of this PR a mess. So, I had to learn about the concept of squashing the commits.
I also got stuck a lot while trying to find out the perpendicular directions to the vectors used in
gtab1. I was supposed to implement the following formula:
I had to spend a lot of time figuring out how to combine 3 vectors of shape (81, 3) to get V. And also working on the function which would give me the perpendicular vector to the vector in
I got a bunch of
ValueErrors saying: could not broadcast input array from shape (3,3,1) into shape (3,3) and some
IndexError saying: shape mismatch: indexing arrays could not be broadcast together with shapes (81,) (3,1) (3,).
I also had to experiment on how to concatenate different vectors to get the vector of the right shape, since there are a bunch of possible options while stacking, such as vstack, hstack, stack, etc.